Transcript: KCNMB2-AS1:1

Basic information

LNCipedia transcript ID: KCNMB2-AS1:1 
HGNC Gene Symbol: KCNMB2-AS1    
HGNC Full Gene Name: KCNMB2 antisense RNA 1
Ensembl Gene ID: ENSG00000237978
Ensembl Transcript ID: ENST00000425330
Location (hg19): chr3:178466077-178578193
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 508 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000425330; ENST00000425330.1; RP11-385J1.2-004; OTTHUMT00000348334.1; NONHSAT093379
Alternative gene names: ENSG00000237978; RP11-385J1.2; ENSG00000237978.1; OTTHUMG00000157289.1; ENSG00000237978.5; KCNMB2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -54.3148 non-coding 
CPAT coding probability 5.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
KCNMB2-AS1:1 no no no no

Available literature

  1. Wang (2015), Detection of long-chain non-encoding RNA differential expression in non-small cell lung cancer by microarray analysis and preliminary verification., Mol Med Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZMAT3-2:1
3.1 lnc-ZMAT3-2:1
4.0 KCNMB2-AS1:1
4.1 KCNMB2-AS1:1
5.0 KCNMB2-AS1:1
5.1 KCNMB2-AS1:1
5.2 KCNMB2-AS1:1