Transcript: KDM4A-AS1:1

Basic information

LNCipedia transcript ID: KDM4A-AS1:1 
HGNC Gene Symbol: KDM4A-AS1    
HGNC Full Gene Name: KDM4A antisense RNA 1
Ensembl Gene ID: ENSG00000236200
Ensembl Transcript ID: ENST00000398804
Location (hg19): chr1:44165436-44173809
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 592 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000398804.3; RP11-184I16.2-003; OTTHUMT00000019955.1; NONHSAT002818; ENST00000398804.7
Alternative gene names: ENSG00000236200.1; RP11-184I16.2; OTTHUMG00000007557.1; KDM4A-AS1; ENSG00000236200.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 19.8508 non-coding 
CPAT coding probability 14.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
KDM4A-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HYI-2:1
4.0 KDM4A-AS1:1
4.1 KDM4A-AS1:1
5.0 KDM4A-AS1:1
5.1 KDM4A-AS1:1
5.2 KDM4A-AS1:1