Transcript: KIF25-AS1:2

Basic information

LNCipedia transcript ID: KIF25-AS1:2 
LNCipedia gene ID: KIF25-AS1
RefSeq ID: NR_103750
Location (hg19): chr6:168394867-168397757
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1405 bp
Exons: 4
Sources: Broad Institute; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00011245; NR_103750; NR_103750.1
Alternative gene names: XLOC_005927; linc-HGC6.3; HGC6.1.1; KIF25-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.1714 non-coding 
CPAT coding probability 63.20% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
KIF25-AS1:2 no no no no

Available literature

  1. Minaguchi (1999), Complete DNA sequence and characterization of a 330-kb VNTR-rich region on chromosome 6q27 that is commonly deleted in ovarian cancer., DNA Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FRMD1-1:1
3.1 lnc-FRMD1-1:1
4.0 KIF25-AS1:2
4.1 KIF25-AS1:2
5.0 KIF25-AS1:2
5.1 KIF25-AS1:2
5.2 KIF25-AS1:2