Transcript: KIF25-AS1:7

Basic information

LNCipedia transcript ID: KIF25-AS1:7 
LNCipedia gene ID: KIF25-AS1
Location (hg19): chr6:168393506-168397117
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2119 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00011617; NONHSAT116130
Alternative gene names: XLOC_005927; linc-HGC6.3; HGC6.1.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.1714 non-coding 
CPAT coding probability 62.29% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
KIF25-AS1:7 no no no no

Available literature

  1. Minaguchi (1999), Complete DNA sequence and characterization of a 330-kb VNTR-rich region on chromosome 6q27 that is commonly deleted in ovarian cancer., DNA Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FRMD1-1:5
3.1 lnc-FRMD1-1:5
4.0 KIF25-AS1:7
4.1 KIF25-AS1:7
5.0 KIF25-AS1:7
5.1 KIF25-AS1:7
5.2 KIF25-AS1:7