Transcript: KIZ-AS1:3

Basic information

LNCipedia transcript ID: KIZ-AS1:3 
LNCipedia gene ID: KIZ-AS1
Location (hg19): chr20:21179171-21198903
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 563 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000433213; ENST00000433213.1; RP4-777D9.2-002; OTTHUMT00000078258.1
Alternative gene names: ENSG00000232712; RP4-777D9.2; ENSG00000232712.1; OTTHUMG00000032018.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -390.955 non-coding 
CPAT coding probability 3.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
KIZ-AS1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NKX2-4-1:2
3.1 lnc-NKX2-4-1:2
4.0 KIZ-AS1:3
4.1 KIZ-AS1:3
5.0 KIZ-AS1:3
5.1 KIZ-AS1:3
5.2 KIZ-AS1:3