Transcript: KRBOX1-AS1:2

Basic information

LNCipedia transcript ID: KRBOX1-AS1:2 
LNCipedia gene ID: KRBOX1-AS1
RefSeq ID: NR_122033
Location (hg19): chr3:42975736-42978277
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2142 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_122033; NR_122033.1
Alternative gene names: FLJ32776; KRBOX1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 5.0611 non-coding 
CPAT coding probability 10.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
KRBOX1-AS1:2 no no no no

Available literature

  1. Ma (2015), Co‑expression of the carbamoyl‑phosphate synthase 1 gene and its long non‑coding RNA correlates with poor prognosis of patients with intrahepatic cholangiocarcinoma., Mol Med Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CYP8B1-1:2
4.0 KRBOX1-AS1:2
4.1 KRBOX1-AS1:2
5.0 KRBOX1-AS1:2
5.1 KRBOX1-AS1:2
5.2 KRBOX1-AS1:2