Transcript: KRT7-AS:3

Basic information

LNCipedia transcript ID: KRT7-AS:3 
HGNC Gene Symbol: KRT7-AS    
HGNC Full Gene Name: KRT7 antisense RNA 1
Ensembl Gene ID: ENSG00000257671
Ensembl Transcript ID: ENST00000546686
Location (hg19): chr12:52638832-52641232
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1693 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000546686.1; RP3-416H24.1-001; OTTHUMT00000404910.1; NONHSAT028355
Alternative gene names: ENSG00000257671.1; RP3-416H24.1; OTTHUMG00000169581.1; KRT7-AS


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.1731 non-coding 
CPAT coding probability 5.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
KRT7-AS:3 no no no no

Available literature

  1. Huang (2016), Long non-coding antisense RNA KRT7-AS is activated in gastric cancers and supports cancer cell progression by increasing KRT7 expression., Oncogene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KRT81-3:1
4.0 lnc-KRT81-3:1
4.1 lnc-KRT81-3:1
5.0 lnc-KRT81-3:1
5.1 KRT7-AS:2
5.2 KRT7-AS:3