Transcript: KRTAP5-AS1:4

Basic information

LNCipedia transcript ID: KRTAP5-AS1:4 
LNCipedia gene ID: KRTAP5-AS1
Location (hg19): chr11:1594477-1623308
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1626 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT017408
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.9831 non-coding 
CPAT coding probability 13.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
KRTAP5-AS1:4 no no no no

Available literature

  1. Song (2017), Non-coding RNAs participate in the regulatory network of CLDN4 via ceRNA mediated miRNA evasion., Nat Commun
  2. Miano (2016), Luminal long non-coding RNAs regulated by estrogen receptor alpha in a ligand-independent manner show functional roles in breast cancer., Oncotarget
  3. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KRTAP5-5-1:5
4.0 KRTAP5-AS1:4
4.1 KRTAP5-AS1:4
5.0 KRTAP5-AS1:4
5.1 KRTAP5-AS1:4
5.2 KRTAP5-AS1:4