Transcript: KTN1-AS1:3

Basic information

LNCipedia transcript ID: KTN1-AS1:3 
LNCipedia gene ID: KTN1-AS1
RefSeq ID: NR_027123
Location (hg19): chr14:56042875-56046810
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1512 bp
Exons: 3
Sources: Biogazelle lncRNA chip; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000335142; NONHSAT037015; NR_027123; NR_027123.1
Alternative gene names: ENSG00000186615; ; MYCLo-3; KTN1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -122.1778 non-coding 
CPAT coding probability 3.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
KTN1-AS1:3 no no no no

Available literature

  1. Kim (2015), Role of MYC-regulated long noncoding RNAs in cell cycle regulation and tumorigenesis., J. Natl. Cancer Inst.
  2. Hart (2014), MYC regulates the non-coding transcriptome., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TBPL2-1:3
3.1 lnc-TBPL2-1:3
4.0 KTN1-AS1:3
4.1 KTN1-AS1:3
5.0 KTN1-AS1:3
5.1 KTN1-AS1:3
5.2 KTN1-AS1:3