Transcript: LAMP5-AS1:1

Basic information

LNCipedia transcript ID: LAMP5-AS1:1 
HGNC Gene Symbol: LAMP5-AS1    
HGNC Full Gene Name: LAMP5 antisense RNA 1
Ensembl Gene ID: ENSG00000225988
Ensembl Transcript ID: ENST00000443469
RefSeq ID: NR_109957
Location (hg19): chr20:9485827-9495645
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1928 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000443469.1; RP5-1119D9.4-001; OTTHUMT00000077945.1; NONHSAT078564; NR_109957; NR_109957.1
Alternative gene names: ENSG00000225988.1; RP5-1119D9.4; OTTHUMG00000031850.1; LAMP5-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -110.4915 non-coding 
CPAT coding probability 8.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LAMP5-AS1:1 no no no no

Available literature

  1. Fang (2014), A distinct set of long non-coding RNAs in childhood MLL-rearranged acute lymphoblastic leukemia: biology and epigenetic target., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PAK7-1:1
4.0 LAMP5-AS1:1
4.1 LAMP5-AS1:1
5.0 LAMP5-AS1:1
5.1 LAMP5-AS1:1
5.2 LAMP5-AS1:1