Transcript: LARGE-AS1:13

Basic information

LNCipedia transcript ID: LARGE-AS1:13 
HGNC Gene Symbol: LARGE-AS1    
HGNC Full Gene Name: LARGE antisense RNA 1
Ensembl Gene ID: ENSG00000224973
Ensembl Transcript ID: ENST00000416275
Location (hg19): chr22:34140116-34146670
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 435 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000416275.1; CTA-282F2.3-007; OTTHUMT00000320572.2; NONHSAT085020
Alternative gene names: ENSG00000224973.1; CTA-282F2.3; OTTHUMG00000150916.3; LARGE-AS1; ENSG00000224973.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -147.4131 non-coding 
CPAT coding probability 2.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LARGE-AS1:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TIMP3-6:7
4.0 LARGE-AS1:13
4.1 LARGE-AS1:13
5.0 LARGE-AS1:13
5.1 LARGE-AS1:13
5.2 LARGE-AS1:13