Transcript: LHFPL3-AS1:1

Basic information

LNCipedia transcript ID: LHFPL3-AS1:1 
HGNC Gene Symbol: LHFPL3-AS1    
HGNC Full Gene Name: LHFPL3 antisense RNA 1
Ensembl Gene ID: ENSG00000226869
Ensembl Transcript ID: ENST00000416376
Location (hg19): chr7:104425659-104444554
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 866 bp
Exons: 7
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000416376.2; RP11-203P23.1-002; OTTHUMT00000348294.2; NONHSAT122567; ENST00000416376.6
Alternative gene names: ENSG00000226869.2; RP11-203P23.1; OTTHUMG00000157276.2; LHFPL3-AS1; ENSG00000226869.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -170.8429 non-coding 
CPAT coding probability 10.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LHFPL3-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SRPK2-4:2
4.0 LHFPL3-AS1:1
4.1 LHFPL3-AS1:1
5.0 LHFPL3-AS1:1
5.1 LHFPL3-AS1:1
5.2 LHFPL3-AS1:1