Transcript: LHX1-DT:16

Basic information

LNCipedia transcript ID: LHX1-DT:16 
LNCipedia gene ID: LHX1-DT
Location (hg19): chr17:35264428-35293957
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 492 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000532387; ENST00000532387.1; RP11-445F12.1-003; OTTHUMT00000387606.1
Alternative gene names: ENSG00000255509; RP11-445F12.1; ENSG00000255509.1; OTTHUMG00000166047.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -543.023 non-coding 
CPAT coding probability 3.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LHX1-DT:16 no no no no

Available literature

  1. Blondeau (2015), Identification of novel long non-coding RNAs in clear cell renal cell carcinoma., Clin Epigenetics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ACACA-1:3
3.1 lnc-ACACA-1:3
4.0 lnc-ACACA-5:3
4.1 lnc-ACACA-5:3
5.0 lnc-ACACA-5:3
5.1 LHX1-DT:7
5.2 LHX1-DT:16