Transcript: LIN28B-AS1:11

Basic information

LNCipedia transcript ID: LIN28B-AS1:11 
LNCipedia gene ID: LIN28B-AS1
Location (hg19): chr6:105374369-105379376
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 412 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012238; NONHSAT114202
Alternative gene names: XLOC_005794; linc-HACE1-2; dJ439I14.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -110.4022 non-coding 
CPAT coding probability 1.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LIN28B-AS1:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HACE1-1:1
3.1 lnc-HACE1-1:1
4.0 lnc-HACE1-1:1
4.1 LIN28B-AS1:11
5.0 LIN28B-AS1:11
5.1 LIN28B-AS1:11
5.2 LIN28B-AS1:11