Transcript: LIN28B-AS1:5

Basic information

LNCipedia transcript ID: LIN28B-AS1:5 
HGNC Gene Symbol: LIN28B-AS1    
HGNC Full Gene Name: LIN28B antisense RNA 1
Ensembl Gene ID: ENSG00000203809
Ensembl Transcript ID: ENST00000636682
Location (hg19): chr6:105383081-105389138
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1797 bp
Exons: 3
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000636682.1
Alternative gene names: ENSG00000203809.6; LIN28B-AS1; dJ439I14.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -39.9691 non-coding 
CPAT coding probability 0.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LIN28B-AS1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LIN28B-AS1:5
5.0 LIN28B-AS1:5
5.1 LIN28B-AS1:5
5.2 LIN28B-AS1:5