Transcript: LINC-PINT:6

Basic information

LNCipedia transcript ID: LINC-PINT:6 
LNCipedia gene ID: LINC-PINT
RefSeq ID: NR_109851
Location (hg19): chr7:130628919-130794675
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 3257 bp
Exons: 6
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_109851; NR_109851.1
Alternative gene names: FLJ43663; PINT; LincRNA-Pint; LINC-PINT


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -25.3406 non-coding 
CPAT coding probability 15.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC-PINT:6 no no no no

Available literature

  1. Persson (2015), Transcriptome analysis of controlled and therapy-resistant childhood asthma reveals distinct gene expression profiles., J. Allergy Clin. Immunol.
  2. Marín-Béjar (2013), Pint lincRNA connects the p53 pathway with epigenetic silencing by the Polycomb repressive complex 2., Genome Biol.
  3. Sauvageau (2013), Multiple knockout mouse models reveal lincRNAs are required for life and brain development., Elife
  4. Shiekhattar (2013), PINTing for p53., Genome Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KLF14-2:13
4.0 LINC-PINT:6
4.1 LINC-PINT:6
5.0 LINC-PINT:6
5.1 LINC-PINT:6
5.2 LINC-PINT:6