Transcript: LINC-PINT:83

Basic information

LNCipedia transcript ID: LINC-PINT:83 
LNCipedia gene ID: LINC-PINT
Ensembl Gene ID: ENSG00000285106
Ensembl Transcript ID: ENST00000643779
Location (hg19): chr7:130565817-130794920
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5195 bp
Exons: 7
Sources: Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000643779.1
Alternative gene names: ENSG00000285106.1; AC016831.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -50.3572 non-coding 
CPAT coding probability 10.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC-PINT:83 yes no no no

Available literature

  1. Persson (2015), Transcriptome analysis of controlled and therapy-resistant childhood asthma reveals distinct gene expression profiles., J. Allergy Clin. Immunol.
  2. Marín-Béjar (2013), Pint lincRNA connects the p53 pathway with epigenetic silencing by the Polycomb repressive complex 2., Genome Biol.
  3. Sauvageau (2013), Multiple knockout mouse models reveal lincRNAs are required for life and brain development., Elife
  4. Shiekhattar (2013), PINTing for p53., Genome Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 LINC-PINT:83
5.1 LINC-PINT:83
5.2 LINC-PINT:83