Transcript: LINC00029:4

Basic information

LNCipedia transcript ID: LINC00029:4 
LNCipedia gene ID: LINC00029
Location (hg19): chr20:61665570-61668380
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1748 bp
Exons: 4
Sources: Broad Institute
Alternative transcript names: TCONS_00027854
Alternative gene names: XLOC_013840; linc-BHLHE23-2; bA305P22.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.9827 non-coding 
CPAT coding probability 17.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00029:4 no no no no

Available literature

  1. Deloukas (2001), The DNA sequence and comparative analysis of human chromosome 20., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BHLHE23-1:4
3.1 lnc-BHLHE23-1:5
4.0 LINC00029:4
4.1 LINC00029:4
5.0 LINC00029:4
5.1 LINC00029:4
5.2 LINC00029:4