Transcript: LINC00052:9

Basic information

LNCipedia transcript ID: LINC00052:9 
LNCipedia gene ID: LINC00052
Location (hg19): chr15:88120160-88122917
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1786 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000259527.1|ENST00000560153.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -2.3209 non-coding 
CPAT coding probability 1.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00052:9 no no no no

Available literature

  1. Salameh (2017), HER3 and LINC00052 interplay promotes tumor growth in breast cancer., Oncotarget
  2. Zhu (2017), LINC00052 upregulates EPB41L3 to inhibit migration and invasion of hepatocellular carcinoma by binding miR-452-5p., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AGBL1-4:4
5.0 lnc-AGBL1-4:4
5.1 LINC00052:5
5.2 LINC00052:9