Transcript: LINC00092:3

Basic information

LNCipedia transcript ID: LINC00092:3 
HGNC Gene Symbol: LINC00092    
HGNC Full Gene Name: long intergenic non-protein coding RNA 92
Ensembl Gene ID: ENSG00000225194
Ensembl Transcript ID: ENST00000580908
Location (hg19): chr9:98787998-98790247
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 580 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000580908.1; LINC00092-003; OTTHUMT00000442500.1
Alternative gene names: ENSG00000225194.2; LINC00092; OTTHUMG00000020288.2; bA346B7.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -82.1058 non-coding 
CPAT coding probability 19.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00092:3 no no no no

Available literature

  1. Zhao (2017), Long Noncoding RNA LINC00092 Acts in Cancer-Associated Fibroblasts to Drive Glycolysis and Progression of Ovarian Cancer., Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HSD17B3-1:1
4.0 LINC00092:3
4.1 LINC00092:3
5.0 LINC00092:3
5.1 LINC00092:3
5.2 LINC00092:3