Transcript: LINC00102:1

Basic information

LNCipedia transcript ID: LINC00102:1 
HGNC Gene Symbol: LINC00102    
HGNC Full Gene Name: long intergenic non-protein coding RNA 102
Ensembl Gene ID: ENSG00000230542
Ensembl Transcript ID: ENST00000445785
Location (hg19): chrX:2531029-2533388
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1340 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017030; ENST00000445785; ENST00000445785.1; LINC00102-001; OTTHUMT00000055623.1; NONHSAT136084; ENST00000445785.6
Alternative gene names: XLOC_008101; linc-ZBED1-3; ENSG00000230542; NCRNA00102; ENSG00000230542.1; LINC00102; OTTHUMG00000021072.1; ENSG00000230542.6; OTTHUMT00000055623


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.0825 non-coding 
CPAT coding probability 1.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00102:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DHRSX-2:1
3.1 lnc-DHRSX-2:1
4.0 LINC00102:1
4.1 LINC00102:1
5.0 LINC00102:1
5.1 LINC00102:1
5.2 LINC00102:1