Transcript: LINC00106:11

Basic information

LNCipedia transcript ID: LINC00106:11 
LNCipedia gene ID: LINC00106
Location (hg19): chrX:1511314-1515899
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1874 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000236871.2|FTMT29100003041.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 264.8949 coding 
CPAT coding probability 83.67% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00106:11 yes no no no

Available literature

  1. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-IL3RA-1:19
5.0 lnc-IL3RA-1:19
5.1 LINC00106:2
5.2 LINC00106:11