Transcript: LINC00106:18

Basic information

LNCipedia transcript ID: LINC00106:18 
HGNC Gene Symbol: LINC00106    
HGNC Full Gene Name: long intergenic non-protein coding RNA 106
Ensembl Gene ID: ENSG00000236871
Ensembl Transcript ID: ENST00000430235
Location (hg19): chrX:1515918-1518295
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 370 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT136054; ENST00000430235.2; ENST00000430235.7
Alternative gene names: ENSG00000236871.2; LINC00106; ENSG00000236871.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 39.7328 non-coding 
CPAT coding probability 10.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00106:18 no no no no

Available literature

  1. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IL3RA-2:2
4.0 lnc-IL3RA-1:13
4.1 lnc-IL3RA-1:13
5.0 lnc-IL3RA-1:13
5.1 LINC00106:9
5.2 LINC00106:18