Transcript: LINC00111:1

Basic information

LNCipedia transcript ID: LINC00111:1 
HGNC Gene Symbol: LINC00111    
HGNC Full Gene Name: long intergenic non-protein coding RNA 111
Ensembl Gene ID: ENSG00000227702
Ensembl Transcript ID: ENST00000413718
Location (hg19): chr21:43099341-43117496
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 575 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000413718; ENST00000413718.1; LINC00111-001; OTTHUMT00000195206.1; NONHSAT082273
Alternative gene names: ENSG00000227702; NCRNA00111; ENSG00000227702.1; LINC00111; OTTHUMG00000086772.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.2191 non-coding 
CPAT coding probability 2.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00111:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MX1-2:1
3.1 lnc-MX1-2:1
4.0 LINC00111:1
4.1 LINC00111:1
5.0 LINC00111:1
5.1 LINC00111:1
5.2 LINC00111:1