Transcript: LINC00115:4

Basic information

LNCipedia transcript ID: LINC00115:4 
HGNC Gene Symbol: LINC00115    
HGNC Full Gene Name: long intergenic non-protein coding RNA 115
Ensembl Gene ID: ENSG00000225880
Ensembl Transcript ID: ENST00000473798
RefSeq ID: NR_024321
Location (hg19): chr1:761586-762902
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1317 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000473798; ENST00000473798.1; LINC00115-001; OTTHUMT00000280398.2; NONHSAT000157; NR_024321; NR_024321.1
Alternative gene names: ENSG00000225880; NCRNA00115; ENSG00000225880.4; LINC00115; OTTHUMG00000141258.2; ENSG00000225880.5; FLJ22639


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 40.2431 non-coding 
CPAT coding probability 82.85% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00115:4 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NOC2L-4:1
3.1 lnc-NOC2L-4:1
4.0 LINC00115:4
4.1 LINC00115:4
5.0 LINC00115:4
5.1 LINC00115:4
5.2 LINC00115:4