Transcript: LINC00158:3

Basic information

LNCipedia transcript ID: LINC00158:3 
HGNC Gene Symbol: LINC00158    
HGNC Full Gene Name: long intergenic non-protein coding RNA 158
Ensembl Gene ID: ENSG00000185433
Ensembl Transcript ID: ENST00000439840
Location (hg19): chr21:26768799-26802321
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 631 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000439840; ENST00000439840.1; LINC00158-003; OTTHUMT00000171190.1; NONHSAT081482
Alternative gene names: ENSG00000185433; NCRNA00158; ENSG00000185433.4; LINC00158; OTTHUMG00000078368.1; ENSG00000185433.8;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -138.2376 non-coding 
CPAT coding probability 1.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00158:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MRPL39-4:3
3.1 lnc-MRPL39-5:3
4.0 LINC00158:3
4.1 LINC00158:3
5.0 LINC00158:3
5.1 LINC00158:3
5.2 LINC00158:3