Transcript: LINC00161:5

Basic information

LNCipedia transcript ID: LINC00161:5 
LNCipedia gene ID: LINC00161
Location (hg19): chr21:29912396-29915393
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 376 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028985; NONHSAT081603
Alternative gene names: XLOC_013901; linc-USP16-4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -75.2993 non-coding 
CPAT coding probability 8.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00161:5 no no no no

Available literature

  1. Wang (2016), Long non-coding RNA LINC00161 sensitises osteosarcoma cells to cisplatin-induced apoptosis by regulating the miR-645-IFIT2 axis., Cancer Lett.
  2. Reymond (2002), Nineteen additional unpredicted transcripts from human chromosome 21., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-USP16-2:4
3.1 lnc-USP16-2:4
4.0 LINC00161:5
4.1 LINC00161:5
5.0 LINC00161:5
5.1 LINC00161:5
5.2 LINC00161:5