Transcript: LINC00165:3

Basic information

LNCipedia transcript ID: LINC00165:3 
HGNC Gene Symbol: LINC00165    
HGNC Full Gene Name: long intergenic non-protein coding RNA 165
Ensembl Gene ID: ENSG00000261706
Ensembl Transcript ID: ENST00000569966
Location (hg19): chr21:46414277-46415100
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 824 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569966.1; AP001505.9-001; OTTHUMT00000420370.1; NONHSAT082907
Alternative gene names: ENSG00000261706.1; AP001505.9; OTTHUMG00000172755.1; LINC00165; AP001505.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -143.8824 non-coding 
CPAT coding probability 39.61% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00165:3 no no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.
  2. Kawashima (2006), Genomewide association analysis of human narcolepsy and a new resistance gene., Am. J. Hum. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C21orf67-3:1
4.0 lnc-C21orf67-3:1
4.1 lnc-C21orf67-3:1
5.0 lnc-C21orf67-3:1
5.1 LINC00165:2
5.2 LINC00165:3