Transcript: LINC00174:5

Basic information

LNCipedia transcript ID: LINC00174:5 
HGNC Gene Symbol: LINC00174    
HGNC Full Gene Name: long intergenic non-protein coding RNA 174
Ensembl Gene ID: ENSG00000179406
Ensembl Transcript ID: ENST00000416572
Location (hg19): chr7:65844814-65860906
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 556 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000416572; ENST00000416572.1; LINC00174-002; OTTHUMT00000344722.1; NONHSAT121166
Alternative gene names: ENSG00000179406; NCRNA00174; ENSG00000179406.6; LINC00174; OTTHUMG00000156590.1; ; ENSG00000179406.7

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.3519 non-coding 
CPAT coding probability 36.41% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00174:5 yes no no no

Available literature

  1. Shen (2018), STAT1-mediated upregulation of lncRNA LINC00174 functions a ceRNA for miR-1910-3p to facilitate colorectal carcinoma progression through regulation of TAZ., Gene

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GUSB-5:2
3.1 lnc-GUSB-6:2
4.0 LINC00174:5
4.1 LINC00174:5
5.0 LINC00174:5
5.1 LINC00174:5
5.2 LINC00174:5