Transcript: LINC00174:8

Basic information

LNCipedia transcript ID: LINC00174:8 
HGNC Gene Symbol: LINC00174    
HGNC Full Gene Name: long intergenic non-protein coding RNA 174
Ensembl Gene ID: ENSG00000179406
Ensembl Transcript ID: ENST00000412091
Location (hg19): chr7:65956996-65958553
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 682 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000412091; ENST00000412091.1; GS1-124K5.3-002; OTTHUMT00000344734.1
Alternative gene names: ENSG00000223473; GS1-124K5.3; ENSG00000223473.1; OTTHUMG00000156596.1; ENSG00000223473.2; ; ENSG00000179406.7; LINC00174


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.1476 non-coding 
CPAT coding probability 2.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00174:8 no no no no

Available literature

  1. Shen (2018), STAT1-mediated upregulation of lncRNA LINC00174 functions a ceRNA for miR-1910-3p to facilitate colorectal carcinoma progression through regulation of TAZ., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SBDS-5:1
3.1 lnc-SBDS-5:1
4.0 lnc-GUSB-5:13
4.1 LINC00174:8
5.0 LINC00174:8
5.1 LINC00174:8
5.2 LINC00174:8