Transcript: LINC00189:1

Basic information

LNCipedia transcript ID: LINC00189:1 
HGNC Gene Symbol: LINC00189    
HGNC Full Gene Name: long intergenic non-protein coding RNA 189
Ensembl Gene ID: ENSG00000215533
Ensembl Transcript ID: ENST00000447125
Location (hg19): chr21:30565801-30660526
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 783 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000447125.1; LINC00189-003; OTTHUMT00000171971.1; NONHSAT081630; ENST00000447125.5
Alternative gene names: ENSG00000215533.4; LINC00189; OTTHUMG00000078876.1; ENSG00000215533.8;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.5807 non-coding 
CPAT coding probability 1.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00189:1 yes no no no

Available literature

  1. Gardiner (2002), Annotation of human chromosome 21 for relevance to Down syndrome: gene structure and expression analysis., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BACH1-1:2
4.0 LINC00189:1
4.1 LINC00189:1
5.0 LINC00189:1
5.1 LINC00189:1
5.2 LINC00189:1