Transcript: LINC00189:2

Basic information

LNCipedia transcript ID: LINC00189:2 
LNCipedia gene ID: LINC00189
Location (hg19): chr21:30565801-30660526
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 664 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000545936.1; LINC00189-201; NONHSAT081628
Alternative gene names: ENSG00000215533.4; LINC00189; OTTHUMG00000078876.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.5807 non-coding 
CPAT coding probability 2.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00189:2 yes no no no

Available literature

  1. Gardiner (2002), Annotation of human chromosome 21 for relevance to Down syndrome: gene structure and expression analysis., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BACH1-1:1
4.0 LINC00189:2
4.1 LINC00189:2
5.0 LINC00189:2
5.1 LINC00189:2
5.2 LINC00189:2