Transcript: LINC00189:7

Basic information

LNCipedia transcript ID: LINC00189:7 
LNCipedia gene ID: LINC00189
Location (hg19): chr21:30565663-30661175
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1790 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000215533.4|HBMT00000919406.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 4.5807 non-coding 
CPAT coding probability 0.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00189:7 yes no no no

Available literature

  1. Gardiner (2002), Annotation of human chromosome 21 for relevance to Down syndrome: gene structure and expression analysis., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC00189:7
5.0 LINC00189:7
5.1 LINC00189:7
5.2 LINC00189:7