Transcript: LINC00205:6

Basic information

LNCipedia transcript ID: LINC00205:6 
LNCipedia gene ID: LINC00205
Location (hg19): chr21:46707977-46711653
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1460 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: TCONS_00028858; ENST00000400362; ENST00000400362.2; BX322557.10-002; OTTHUMT00000206807.1; NONHSAT082935
Alternative gene names: XLOC_013981; linc-COL18A1-4; ENSG00000215447; BX322557.10; ENSG00000215447.3; OTTHUMG00000090398.1; ENSG00000215447.7; ; BX322557.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.1306 non-coding 
CPAT coding probability 32.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00205:6 no no no no

Available literature

  1. Reymond (2002), Nineteen additional unpredicted transcripts from human chromosome 21., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ADARB1-3:5
3.1 lnc-ADARB1-3:5
4.0 LINC00205:6
4.1 LINC00205:6
5.0 LINC00205:6
5.1 LINC00205:6
5.2 LINC00205:6