Transcript: LINC00211:2

Basic information

LNCipedia transcript ID: LINC00211:2 
HGNC Gene Symbol: LINC00211    
HGNC Full Gene Name: long intergenic non-protein coding RNA 211
Ensembl Gene ID: ENSG00000237803
Ensembl Transcript ID: ENST00000418746
Location (hg19): chr2:38067181-38103417
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 551 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003252; ENST00000418746; ENST00000418746.1; LINC00211-001; OTTHUMT00000325579.1; NONHSAT070147
Alternative gene names: XLOC_002049; linc-CDC42EP3; ENSG00000237803; NCRNA00211; ENSG00000237803.1; LINC00211; OTTHUMG00000152169.2; ENSG00000237803.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -252.3197 non-coding 
CPAT coding probability 6.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00211:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDC42EP3-1:2
3.1 lnc-CDC42EP3-1:2
4.0 LINC00211:2
4.1 LINC00211:2
5.0 LINC00211:2
5.1 LINC00211:2
5.2 LINC00211:2