Transcript: LINC00222:1

Basic information

LNCipedia transcript ID: LINC00222:1 
LNCipedia gene ID: LINC00222
RefSeq ID: NR_033376
Location (hg19): chr6:109072857-109091145
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1753 bp
Exons: 5
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00011124; NONHSAT114360; NR_033376; NR_033376.1
Alternative gene names: XLOC_005421; linc-ARMC2; dJ354J5.2; LINC00222


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -67.4569 non-coding 
CPAT coding probability 1.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00222:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXO3-1:1
3.1 lnc-FOXO3-1:1
4.0 LINC00222:1
4.1 LINC00222:1
5.0 LINC00222:1
5.1 LINC00222:1
5.2 LINC00222:1