Transcript: LINC00229:2

Basic information

LNCipedia transcript ID: LINC00229:2 
HGNC Gene Symbol: LINC00229    
HGNC Full Gene Name: long intergenic non-protein coding RNA 229
Ensembl Gene ID: ENSG00000234300
Ensembl Transcript ID: ENST00000443783
Location (hg19): chr22:45002819-45021299
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 500 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000443783; ENST00000443783.1; LINC00229-001; OTTHUMT00000314900.1; NONHSAT147222
Alternative gene names: ENSG00000234300; NCRNA00229; ENSG00000234300.1; LINC00229; OTTHUMG00000149974.1; dJ474I12.C22.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -187.6218 non-coding 
CPAT coding probability 5.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00229:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LDOC1L-1:1
3.1 lnc-LDOC1L-1:1
4.0 LINC00229:2
4.1 LINC00229:2
5.0 LINC00229:2
5.1 LINC00229:2
5.2 LINC00229:2