Transcript: LINC00237:4

Basic information

LNCipedia transcript ID: LINC00237:4 
HGNC Gene Symbol: LINC00237    
HGNC Full Gene Name: long intergenic non-protein coding RNA 237
Ensembl Gene ID: ENSG00000225127
Ensembl Transcript ID: ENST00000455890
Location (hg19): chr20:21073450-21082200
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1220 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT078914; ENST00000455890.2
Alternative gene names: ENSG00000225127.2; LINC00237;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -169.5456 non-coding 
CPAT coding probability 5.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00237:4 no no no no

Available literature

  1. Vu (2012), A homozygous balanced reciprocal translocation suggests LINC00237 as a candidate gene for MOMO (macrosomia, obesity, macrocephaly, and ocular abnormalities) syndrome., Am. J. Med. Genet. A


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NKX2-4-3:4
4.0 LINC00237:4
4.1 LINC00237:4
5.0 LINC00237:4
5.1 LINC00237:4
5.2 LINC00237:4