Transcript: LINC00269:1

Basic information

LNCipedia transcript ID: LINC00269:1 
HGNC Gene Symbol: LINC00269    
HGNC Full Gene Name: long intergenic non-protein coding RNA 269
Ensembl Gene ID: ENSG00000215162
Ensembl Transcript ID: ENST00000399711
RefSeq ID: NR_103715
Location (hg19): chrX:68399400-68429767
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2173 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000399711; ENST00000399711.1; LINC00269-001; OTTHUMT00000057035.2; NONHSAT137387; NR_103715; NR_103715.1
Alternative gene names: ENSG00000215162; NCRNA00269; ENSG00000215162.1; LINC00269; OTTHUMG00000021754.2; FLJ33610


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -99.0635 non-coding 
CPAT coding probability 46.87% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00269:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM155B-1:1
3.1 lnc-FAM155B-1:1
4.0 LINC00269:1
4.1 LINC00269:1
5.0 LINC00269:1
5.1 LINC00269:1
5.2 LINC00269:1