Transcript: LINC00299:9

Basic information

LNCipedia transcript ID: LINC00299:9 
HGNC Gene Symbol: LINC00299    
HGNC Full Gene Name: long intergenic non-protein coding RNA 299
Ensembl Gene ID: ENSG00000236790
Ensembl Transcript ID: ENST00000430192
Location (hg19): chr2:8147901-8464760
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1760 bp
Exons: 8
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000430192; ENST00000430192.1; LINC00299-002; OTTHUMT00000276814.3; NONHSAT147072; ENST00000430192.5
Alternative gene names: ENSG00000236790; NCRNA00299; ENSG00000236790.1; LINC00299; OTTHUMG00000112455.5; ENSG00000236790.5; FLJ45673


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -76.7113 non-coding 
CPAT coding probability 1.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00299:9 no no no no

Available literature

  1. Talkowski (2012), Disruption of a large intergenic noncoding RNA in subjects with neurodevelopmental disabilities., Am. J. Hum. Genet.
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KIDINS220-4:6
3.1 lnc-KIDINS220-6:6
4.0 LINC00299:9
4.1 LINC00299:9
5.0 LINC00299:9
5.1 LINC00299:9
5.2 LINC00299:9