Transcript: LINC00302:1

Basic information

LNCipedia transcript ID: LINC00302:1 
LNCipedia gene ID: LINC00302
Location (hg19): chr1:152627953-152629280
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 302 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00000313; ENST00000444515; ENST00000444515.1; LINC00302-001; OTTHUMT00000034506.1; NONHSAT006493
Alternative gene names: XLOC_000411; linc-LCE2D; ENSG00000176075; NCRNA00302; ENSG00000176075.6; LINC00302; OTTHUMG00000012386.1; XP33


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -254.9902 non-coding 
CPAT coding probability 1.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00302:1 no no no no

Available literature

  1. Gupta (2016), Landscape of Long Noncoding RNAs in Psoriatic and Healthy Skin., J. Invest. Dermatol.
  2. Zhao (1997), Positional cloning of novel skin-specific genes from the human epidermal differentiation complex., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LCE2D-1:1
3.1 lnc-LCE2D-1:1
4.0 LINC00302:1
4.1 LINC00302:1
5.0 LINC00302:1
5.1 LINC00302:1
5.2 LINC00302:1