Transcript: LINC00309:1

Basic information

LNCipedia transcript ID: LINC00309:1 
LNCipedia gene ID: LINC00309
Location (hg19): chr2:64412215-64432619
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3304 bp
Exons: 6
Sources: Broad Institute
Alternative transcript names: TCONS_00002666
Alternative gene names: XLOC_002123; linc-PELI1-6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -142.5794 non-coding 
CPAT coding probability 1.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00309:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PELI1-2:1
3.1 lnc-PELI1-2:2
4.0 LINC00309:1
4.1 LINC00309:1
5.0 LINC00309:1
5.1 LINC00309:1
5.2 LINC00309:1