Transcript: LINC00310:15

Basic information

LNCipedia transcript ID: LINC00310:15 
LNCipedia gene ID: LINC00310
Location (hg19): chr21:35560649-35561498
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 745 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00028839; ENST00000419881; ENST00000419881.1; LINC00310-003; OTTHUMT00000194071.1; NONHSAT147189
Alternative gene names: XLOC_013923; linc-KCNE2-3; ENSG00000227456; NCRNA00310; ENSG00000227456.2; LINC00310; OTTHUMG00000086190.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -176.2673 non-coding 
CPAT coding probability 1.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00310:15 no no no no

Available literature

  1. Wang (2015), Multidrug-Resistance Related Long Non-Coding RNA Expression Profile Analysis of Gastric Cancer., PLoS ONE
  2. Reymond (2002), Nineteen additional unpredicted transcripts from human chromosome 21., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MRPS6-1:7
3.1 lnc-MRPS6-1:7
4.0 LINC00310:15
4.1 LINC00310:15
5.0 LINC00310:15
5.1 LINC00310:15
5.2 LINC00310:15