Transcript: LINC00313:9

Basic information

LNCipedia transcript ID: LINC00313:9 
LNCipedia gene ID: LINC00313
Location (hg19): chr21:44890958-44898014
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 563 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00029305; NONHSAT082428
Alternative gene names: XLOC_014105; linc-SIK1-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.0487 non-coding 
CPAT coding probability 28.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00313:9 no no no no

Available literature

  1. Li (2015), Differentially expressed protein-coding genes and long noncoding RNA in early-stage lung cancer., Tumour Biol.
  2. Reymond (2002), Nineteen additional unpredicted transcripts from human chromosome 21., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SIK1-4:8
3.1 lnc-SIK1-4:8
4.0 LINC00313:9
4.1 LINC00313:9
5.0 LINC00313:9
5.1 LINC00313:9
5.2 LINC00313:9