Transcript: LINC00315:1

Basic information

LNCipedia transcript ID: LINC00315:1 
HGNC Gene Symbol: LINC00315    
HGNC Full Gene Name: long intergenic non-protein coding RNA 315
Ensembl Gene ID: ENSG00000184274
Ensembl Transcript ID: ENST00000441947
Location (hg19): chr21:46720160-46725172
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2323 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028958; ENST00000441947; ENST00000441947.1; LINC00315-001; OTTHUMT00000206835.1; NONHSAT082950
Alternative gene names: XLOC_014124; linc-POFUT2-3; ENSG00000184274; NCRNA00315; ENSG00000184274.3; LINC00315; OTTHUMG00000090409.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 35.3835 non-coding 
CPAT coding probability 69.77% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00315:1 no no no no

Available literature

  1. Reymond (2002), Nineteen additional unpredicted transcripts from human chromosome 21., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POFUT2-1:1
3.1 lnc-POFUT2-1:1
4.0 LINC00315:1
4.1 LINC00315:1
5.0 LINC00315:1
5.1 LINC00315:1
5.2 LINC00315:1