Transcript: LINC00331:6

Basic information

LNCipedia transcript ID: LINC00331:6 
HGNC Gene Symbol: LINC00331    
HGNC Full Gene Name: long intergenic non-protein coding RNA 331
Ensembl Gene ID: ENSG00000225427
Ensembl Transcript ID: ENST00000446391
Location (hg19): chr13:79361454-79366442
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 376 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021674; ENST00000446391; ENST00000446391.1; LINC00331-001; OTTHUMT00000045365.1; NONHSAT034466
Alternative gene names: XLOC_010664; linc-RNF219-1; ENSG00000225427; NCRNA00331; ENSG00000225427.1; LINC00331; OTTHUMG00000017124.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -212.6485 non-coding 
CPAT coding probability 0.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00331:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RNF219-1:3
3.1 lnc-RNF219-1:3
4.0 LINC00331:6
4.1 LINC00331:6
5.0 LINC00331:6
5.1 LINC00331:6
5.2 LINC00331:6