Transcript: LINC00333:2

Basic information

LNCipedia transcript ID: LINC00333:2 
HGNC Gene Symbol: LINC00333    
HGNC Full Gene Name: long intergenic non-protein coding RNA 333
Ensembl Gene ID: ENSG00000233349
Ensembl Transcript ID: ENST00000446314
Location (hg19): chr13:85136499-85137371
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 613 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021579; ENST00000446314; ENST00000446314.1; LINC00333-001; OTTHUMT00000045401.1; NONHSAT034553
Alternative gene names: XLOC_010459; linc-SLITRK5-4; ENSG00000233349; NCRNA00333; ENSG00000233349.1; LINC00333; OTTHUMG00000017154.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.9197 non-coding 
CPAT coding probability 0.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00333:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLITRK5-11:1
3.1 lnc-SLITRK5-12:1
4.0 LINC00333:2
4.1 LINC00333:2
5.0 LINC00333:2
5.1 LINC00333:2
5.2 LINC00333:2