Transcript: LINC00343:19

Basic information

LNCipedia transcript ID: LINC00343:19 
HGNC Gene Symbol: LINC00343    
HGNC Full Gene Name: long intergenic non-protein coding RNA 343
Ensembl Gene ID: ENSG00000226620
Ensembl Transcript ID: ENST00000608220
Location (hg19): chr13:106371078-106384063
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 806 bp
Exons: 5
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608220.1; ENST00000608220.5
Alternative gene names: ENSG00000226620.3; LINC00343; ENSG00000226620.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -197.724 non-coding 
CPAT coding probability 10.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00343:19 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DAOA-3:18
4.0 LINC00343:19
4.1 LINC00343:19
5.0 LINC00343:19
5.1 LINC00343:19
5.2 LINC00343:19