Transcript: LINC00349:1

Basic information

LNCipedia transcript ID: LINC00349:1 
HGNC Gene Symbol: LINC00349    
HGNC Full Gene Name: long intergenic non-protein coding RNA 349
Ensembl Gene ID: ENSG00000231238
Ensembl Transcript ID: ENST00000448748
Location (hg19): chr13:19114637-19124837
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 841 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021521; ENST00000448748; ENST00000448748.1; LINC00349-001; OTTHUMT00000043974.1; NONHSAT032186
Alternative gene names: XLOC_010283; linc-MPHOSPH8-9; ENSG00000231238; RP11-77P19.2; ENSG00000231238.1; LINC00349; OTTHUMG00000016451.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.4269 non-coding 
CPAT coding probability 5.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00349:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-408E5.4.1-8:1
3.1 lnc-RP11-408E5.4.1-10:1
4.0 LINC00349:1
4.1 LINC00349:1
5.0 LINC00349:1
5.1 LINC00349:1
5.2 LINC00349:1