Transcript: LINC00354:3

Basic information

LNCipedia transcript ID: LINC00354:3 
LNCipedia gene ID: LINC00354
Location (hg19): chr13:112547719-112555509
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 563 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00021910; NONHSAT035234
Alternative gene names: XLOC_010503; linc-SOX1-1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -189.7214 non-coding 
CPAT coding probability 2.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00354:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SOX1-3:2
3.1 lnc-SOX1-4:2
4.0 LINC00354:3
4.1 LINC00354:3
5.0 LINC00354:3
5.1 LINC00354:3
5.2 LINC00354:3